PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 88aa    MW: 10071.5 Da    PI: 9.8755
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523610.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-081558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   + + +a + +  +   +W ++ar +g g+t +++k ++
   XP_010523610.1 15 VWTAKQNKMFEKALAVFEDEtpdRWQKVARAVG-GKTTEEVKAHY 58
                     7*****************99*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.051862IPR017877Myb-like domain
SMARTSM007172.2E-51264IPR001005SANT/Myb domain
SuperFamilySSF466894.27E-121470IPR009057Homeodomain-like
PfamPF002491.7E-51558IPR001005SANT/Myb domain
CDDcd001671.15E-41658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASTSLTSSR GSSSVWTAKQ NKMFEKALAV FEDETPDRWQ KVARAVGGKT TEEVKAHYDI  60
LVRDIIHIES GKIPLPDYKP CYHKRFMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-30679174RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523610.11e-61PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1733e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLB9GRM82e-35B9GRM8_POPTR; Myb family transcription factor family protein
STRINGPOPTR_0002s03640.16e-35(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-33RAD-like 6